DreEX6004248 @ danRer10
Exon Skipping
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17681321-17681839:+
Coord C1 exon
chr7:17681321-17681509
Coord A exon
chr7:17681585-17681659
Coord C2 exon
chr7:17681781-17681839
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCTGTCGTCCTGCAGTTA
3' ss Score
9.67
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTCCATGCTATGGACACTCTCCAGAAGAACGGCTACGACCTCGCCAAGGCCATGTCGACGCTGGTGCCACAGGGGGGCCCAGTGCTGTGCCGGGACGAGATGGAAGAGTGGAGCGCTTCTGAAGCCATGCTCTTCGAGGAGGCTCTGGAGAAATACGGCAAAGACTTCAATGACATTCGCCAAGACTTT
Seq A exon
TTACCCTGGAAGTCGTTAGCTAGTGTGGTCCAGTTCTACTACATGTGGAAGACTACTGATCGTTATATCCAGCAG
Seq C2 exon
AAAAGACTAAAGGCAGCAGAGGCGGACAGCAAGCTGAAGCAGGTGTACATCCCCACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.951
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCATGTCGACGCTG
R:
GCCTCTGCTGCCTTTAGTCTT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]