BtaEX6103279 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43680746-43681362:-
Coord C1 exon
chr29:43681242-43681362
Coord A exon
chr29:43680996-43681116
Coord C2 exon
chr29:43680746-43680869
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCCTACCCCCGTAGGGA
3' ss Score
10.62
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGAAGGACGAGTTCGACATCCCCAACCTCACGGACAACAGCCGGCGCCAGCTCTTCCGCACCAAGAGCAAGCGCCGCTTCTTCTTCCGCGTGTCGGAGGAGCAGCTGCAGCAGCAGCGCAG
Seq A exon
GGAGATGCTGAGGGACCCTTTCGTGCGCTCCAAGCTCATCTCAACACCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTGCTGACGGGAGACCCAGCGCCAGGGACCTGCCCCCGGTG
Seq C2 exon
GCTGCGGAAGTGAAGGGACGAGGTGCCCGCGGCTCTGGCCCGCAGCGGCCCCACAGCTTCTCCGAGGCCTCGCGGCGCCCAGTCTCCATGGGCAGTGACGGCCTCGCTAAAGATGCAGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'40-46,'40-45,42-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.683 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=WD(100=65.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACGAGTTCGACATCCC
R:
GGGTCTGCATCTTTAGCGAGG
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]