HsaEX6002794 @ hg38
Exon Skipping
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64826671-64827398:-
Coord C1 exon
chr11:64827278-64827398
Coord A exon
chr11:64827050-64827167
Coord C2 exon
chr11:64826671-64826794
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACTTACACCTCCGCCCACAGGGA
3' ss Score
9.29
5' ss Seq
CCGGTTAGT
5' ss Score
6.1
Exon sequences
Seq C1 exon
AGAAGGACGAGTTCGACATCCCGGACCTCACCGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGCTTCTTTTTCCGCGTGTCGGAGGAGCAGCAGAAGCAGCAGCGCAG
Seq A exon
GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGCTCATCTCGCCGCCTACCAACTTCAACCACCTAGTACACGTGGGCCCTGCCAACGGGCGGCCCGGCGCCAGGGACAAGTCCCCG
Seq C2 exon
GCTCCCGAAGAGAAGGGCCGAGTTGCCCGCGGCTCCGGCCCACAGCGGCCCCACAGCTTCTCCGAGGCGTTGCGGCGCCCAGCCTCCATGGGCAGCGAAGGCCTCGGTGGAGACGCAGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-'50-61,'50-60,51-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACGAGTTCGACATCCC
R:
TGGGGTCTGCGTCTCCAC
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains