RnoEX6006281 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221690029-221690690:+
Coord C1 exon
chr1:221690029-221690149
Coord A exon
chr1:221690251-221690368
Coord C2 exon
chr1:221690567-221690690
Length
118 bp
Sequences
Splice sites
3' ss Seq
TACACCCCCTCTGCCTGCAGGGA
3' ss Score
10.75
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGAAGGATGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGCTTCTTCTTCCGGGTGTCTGACGAGCTGCGGCAGCAGCAGCGCAG
Seq A exon
GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCACCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACAGAGGGCAGGCCCGGCCCCAGGGATGGGACCCGG
Seq C2 exon
GCTCAGGAACAGAAGAGCAGAGGCACCCGCAGCTCCGGACCGCAGCGGCCCCACAGCTTCTCAGAGGCATTGCGGCGTCCAGTATCCATGGGCAATGATGGCCTCCCTGGAGAAACAGACCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.675 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGAGTTTGACATTCCCGA
R:
GGGGTCTGTTTCTCCAGGGAG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]