DreEX0020189 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18496541-18507392:-
Coord C1 exon
chr20:18507272-18507392
Coord A exon
chr20:18507063-18507180
Coord C2 exon
chr20:18496541-18496649
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGGTGTTCAACAGGGA
3' ss Score
10.44
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
ATGGCTGTGACCTGGCCATCCCCGAGACCTCAGACAACAGCAAGAAGCTGATGGTGAGGACGCGCAGCAAGAGGAAGTTCCTTTTTAAAGTACCAGAGGAGGAGCGGCTGCAGCAGAGAAG
Seq A exon
GGAGATGCTGAGGGATCCTGAAATGAGATCCAAGCTAATCTCTCACCCCACCAACTTCAATCACGTTGCTCACATGGGCCCAGGCGACGGCATGCAGGTCCTCATGGATCTGCCTCTG
Seq C2 exon
AGTGTGATGCCCTCTTCTCAGGATGACCTGTCTAAAGACAAACCTCGACCTCTGTCTAGCATCTCACGCCAACAGAGGAGCAAGACCCACATCACCCGTACCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'41-47,'41-43,42-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.995 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(46.6=67.5)
C2:
PF0078623=PBD=PD(50.0=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGTGACCTGGCCATC
R:
GTACGGGTGATGTGGGTCTTG
Band lengths:
222-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]