HsaEX6073044 @ hg38
Exon Skipping
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102938306-102939947:-
Coord C1 exon
chr14:102939830-102939947
Coord A exon
chr14:102939610-102939727
Coord C2 exon
chr14:102938306-102938411
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTGTCCTTTCCCCAGAGA
3' ss Score
8.02
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GAGCGGTTCTCAACGTGCCGGACACCTCCGACAACAGCAAGAAGCAGATGCTGCGCACCAGGAGCAAAAGGCGGTTCGTCTTCAAGGTCCCAGAGGAAGAGAGACTGCAGCAGAGGCG
Seq A exon
AGAGATGCTTAGAGACCCAGAATTGAGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCCCACATGGGCCCAGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq C2 exon
AGTGCTGTGCCCCCCTCCCAGGAGGAAAGGCCGGGCCCCGCTCCCACCAACCTGGCTCGCCAGCCTCCATCCAGGAACAAGCCCTACATCTCGTGGCCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(64.3=67.5)
C2:
PF0078623=PBD=PD(31.0=36.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCAACGTGCCGGACAC
R:
TGATGAGGGCCACGAGATGTA
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains