HsaEX6073044 @ hg19
Exon Skipping
Gene
ENSG00000198752 | AL117209.2
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:1738]
Coordinates
chr14:103404643-103406284:-
Coord C1 exon
chr14:103406167-103406284
Coord A exon
chr14:103405947-103406064
Coord C2 exon
chr14:103404643-103404748
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTGTCCTTTCCCCAGAGA
3' ss Score
8.02
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GAGCGGTTCTCAACGTGCCGGACACCTCCGACAACAGCAAGAAGCAGATGCTGCGCACCAGGAGCAAAAGGCGGTTCGTCTTCAAGGTCCCAGAGGAAGAGAGACTGCAGCAGAGGCG
Seq A exon
AGAGATGCTTAGAGACCCAGAATTGAGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCCCACATGGGCCCAGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq C2 exon
AGTGCTGTGCCCCCCTCCCAGGAGGAAAGGCCGGGCCCCGCTCCCACCAACCTGGCTCGCCAGCCTCCATCCAGGAACAAGCCCTACATCTCGTGGCCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752-'38-42,'38-40,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(64.3=67.5)
C2:
PF0078623=PBD=PD(31.0=36.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCAACGTGCCGGACAC
R:
TGATGAGGGCCACGAGATGTA
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)