BtaEX0008097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69282447-69283216:-
Coord C1 exon
chr21:69283099-69283216
Coord A exon
chr21:69282907-69283024
Coord C2 exon
chr21:69282447-69282556
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCATGCCCCTTCCTCCGCAGAGA
3' ss Score
10.85
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAACCGTGCTCAACGTGCCCGACACCTCGGACAACAGCCGGAAGCAGATGCTGCGGACCCGGAGCAAGAGGCGCTTCGTCTTCAAGGTCCCGGAGGAGGAGCGGCTGCAGCAGCGGCG
Seq A exon
AGAGATGCTGAGAGACCCGGAGCTGCGGTCCAAGATGATCTCCAACCCCACCAACTTCAACCACGTGGCCCACATGGGCCCGGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq C2 exon
AGCGCCGTGCCCCCCGCCCAGGAGGAGAGGCCGGGCCCTGCCCCCGCCAGCCTGTCCCGCCCACCTCCGCCCAGGAACAAGCCCTACGTCTCGTGGCCCTCGTCAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-26/28=25-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(73.0=67.5)
C2:
PF0078623=PBD=PD(21.6=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAACGTGCCCGAC
R:
CTGACGAGGGCCACGAGA
Band lengths:
219-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development