MmuEX6083063 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111295056-111296065:-
Coord C1 exon
chr12:111295948-111296065
Coord A exon
chr12:111295739-111295856
Coord C2 exon
chr12:111295056-111295161
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAGATGTTTCCTTCCTGCAGAGA
3' ss Score
8.97
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GAACAATCCTCAATGTGCCCGACACCTCGGACAACAGCAAGAAGCAGATGCTGAGGACACGGAGCAAACGACGTTTTGTCTTCAAGGTTCCCGAGGAAGAGCGGCTACAGCAGCGGCG
Seq A exon
AGAGATGCTCAGAGACCCCGAACTGCGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCTCACATGGGTCCTGGGGATGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq C2 exon
AGTGCTGCACCCACTGTCCAGGAGGAGAAGCAGGGCCCTACCCCAGCAGGCCTCCCCCGGCAGCCGCCATCCAGGAGCAAGCCCTATGTCTCGTGGCCGTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'58-62,'58-60,60-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(61.4=67.5)
C2:
PF0078623=PBD=PD(34.1=41.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCCTCAATGTGCCCGAC
R:
GACGACGGCCACGAGACATAG
Band lengths:
220-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types