GgaEX6039113 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49816627-49818164:-
Coord C1 exon
chr5:49818044-49818164
Coord A exon
chr5:49817832-49817949
Coord C2 exon
chr5:49816627-49816741
Length
118 bp
Sequences
Splice sites
3' ss Seq
AATCACTGTGCTTTCTTTAGGGA
3' ss Score
8.99
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
TAGGAGCTGTCCTCAGTGTACCAGAAACATCTGACAATAGCAAAAAGCAAATGCTTCGAACGAGGAGCAAAAGAAGATTTGTATTTAAGGTTCCCGAGGAAGAGCGAATACAGCAGAGGCG
Seq A exon
GGAAATGCTTAGAGATCCGGAGCTGAGGTCAAAGATGATTTCTAACCCAACGAATTTCAACCACGTGGCTCACATGGGACCAGGAGATGGAATGCAGGTTCTCATGGACCTCCCGCTG
Seq C2 exon
CTGCAGAGCGTCTTACCTGCTGCACAGGATGAAAAACCATGTCCGTCTACAACTAACCTCTCACGGCAGCAACAGCAGCAGAGAAGCAAAACCTATATTTCGTGGCCCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'54-61,'54-58,55-61=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(40.9=67.5)
C2:
PF0078623=PBD=PD(56.1=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTCCTCAGTGTACCA
R:
TTGATGAGGGCCACGAAATATAGG
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]