RnoEX6029854 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135750877-135751845:-
Coord C1 exon
chr6:135751728-135751845
Coord A exon
chr6:135751503-135751620
Coord C2 exon
chr6:135750877-135750982
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAGATGTTTTCTTTCTGCAGAGA
3' ss Score
8.23
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GCACCGTCCTCAATGTGCCCGATACCTCGGACAACAGCAAGAAGCAGATGCTGCGGACGCGGAGCAAACGGCGCTTCGTCTTCAAGGTTCCAGAGGAAGAGAGGCTGCAGCAGCGGCG
Seq A exon
AGAGATGCTCAGAGACCCGGAACTGAGATCCAAAATGATATCCAATCCGACCAACTTCAACCACGTGGCTCACATGGGCCCTGGCGATGGGATGCAGGTGCTCATGGACCTGCCTCTG
Seq C2 exon
AGTGCTGCGCCCACAGCCCAGGAGGAAAAGCAGGGTCCTGCCCCAACAGGCCTCCCTCGGCAGCTCCCATCCAGGAACAAGCCCTATGTCTCATGGCCGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'58-57,'58-55,59-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.988 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=PU(58.7=67.5)
C2:
PF0078623=PBD=PD(37.0=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTCAATGTGCCCGATAC
R:
TGAGGACGGCCATGAGACATA
Band lengths:
219-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]