HsaEX6002794 @ hg19
Exon Skipping
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64594143-64594870:-
Coord C1 exon
chr11:64594750-64594870
Coord A exon
chr11:64594522-64594639
Coord C2 exon
chr11:64594143-64594266
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACTTACACCTCCGCCCACAGGGA
3' ss Score
9.29
5' ss Seq
CCGGTTAGT
5' ss Score
6.1
Exon sequences
Seq C1 exon
AGAAGGACGAGTTCGACATCCCGGACCTCACCGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGCTTCTTTTTCCGCGTGTCGGAGGAGCAGCAGAAGCAGCAGCGCAG
Seq A exon
GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGCTCATCTCGCCGCCTACCAACTTCAACCACCTAGTACACGTGGGCCCTGCCAACGGGCGGCCCGGCGCCAGGGACAAGTCCCCG
Seq C2 exon
GCTCCCGAAGAGAAGGGCCGAGTTGCCCGCGGCTCCGGCCCACAGCGGCCCCACAGCTTCTCCGAGGCGTTGCGGCGCCCAGCCTCCATGGGCAGCGAAGGCCTCGGTGGAGACGCAGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=WD(100=55.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACGAGTTCGACATCCC
R:
TGGGGTCTGCGTCTCCAC
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)