BtaEX6106366 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4420485-4554747:+
Coord C1 exon
chr27:4420485-4420562
Coord A exon
chr27:4543421-4543658
Coord C2 exon
chr27:4554411-4554747
Length
238 bp
Sequences
Splice sites
3' ss Seq
GCCCCTGTCTCTCCCCACAGCTC
3' ss Score
13.5
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTACTGTGGTCTTTGGAAATGGGTCACTGGATTTCCGAGGAACCATTTGAACTGTCTAACTACTTCCCTGCAGCTCCT
Seq A exon
CTCTGCCGCCAGGAACGCCTGTCTTCCGCTGGGCAGTACCGTGGAACCCTGTTTGCCGACCAGCCCACCATGTTCATCTCCCCGGCCAGCAACCCCCCCAGAGCCAAGCTGGGGGAGCTGGTCGTGCTGTGCGGGGGTCGGGTCACACAGGTCCCTCGCCAGGCTAGCATCTTCATCGGACCCTCCCCAGGAAGGAAGAAGGAGACGGTCAAGTACCTGTCGGAAACGTGGATCCTAG
Seq C2 exon
ATTCCATCAGTCAGCACAAGGTCTGTGCCTCTGAGAACCACCTGCTGCCGTGATGAAGACACCTTCCAGCCCACAGCAGCTGTGAACAGCCCACCACTCGTCCTCGGCCACAGAAAGGATGCCTTCGTACATCATCACGTTTGTGCGTGTGTGTGGTGTATGAAGACGTGCCTTCACGTGGCTTTCTGACGTCTGACTGTGTGTCTCAGAGAAGTACTGACCCTCCTCTGTTGGGCCTTTTCTATATAAACCCAGTCTGTGTGTCCCAGAGACGATCATAATTAAGTCCCAGAATTTGTCATTGAAGCACTGTACTGTTAAATAAAGGGTGGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032-'22-35,'22-31,25-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(6.1=15.4)
A:
PF0053321=BRCT=PU(95.6=81.2)
C2:
PF0053321=BRCT=PD(2.9=11.1)
Main Skipping Isoform:
ENSBTAT00000031604fB4169
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACTTCCCTGCAGCTCCT
R:
TCTCTGGGACACACAGACTGG
Band lengths:
293-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]