DreEX0045565 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6158134-6181159:-
Coord C1 exon
chr13:6181082-6181159
Coord A exon
chr13:6159871-6160108
Coord C2 exon
chr13:6158134-6158326
Length
238 bp
Sequences
Splice sites
3' ss Seq
AGGTTTCTCTCTTCTTGCAGATA
3' ss Score
11.29
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCATGTGGTGTTTAGAGCACCAGCAGTGGGTTTCTGAAGAGCCTTTTGAGCTGTCTGAACATTTTCCAGCTGCACCT
Seq A exon
ATATGCCGTCTGCAGCAGCATCTTTCTGCTGGAGAATATCAGCAGGACCTGTTCCATAATCAGCTGCCCATGTTTGTATCCCCATACTCCCAGCCCCCCTGTGGCAGACTAAAAGAACTCATTAAGCTGTGTGGAGGAACTGTGTGCCGAAGTGTACGGCAGGCTGGAATTTGTATTGGGGGGTATAATGGCAAGAAACCAGAGGGGAGCCGCAGCCTTTCAGAACAGTGGATTTTAG
Seq C2 exon
ATTGTGTCACACATCTCATACTGCTCCCATACAAAAACTATGTCTTGGAATGAAGATCCCTGGAACATGGAGAATGTGGAGAGTCTTTGGAGTTCGTCTATTGTAGTTGTTGATTATGTTGATGAGATGTAACTTTTTTTTTCCCCTTTGTAGCTAATTGTTATTAAATATTCTTATTATATGTATCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372-'17-17,'17-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(5.4=15.4)
A:
PF0053321=BRCT=PU(95.7=82.5)
C2:
PF0053321=BRCT=PD(2.9=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGTTTAGAGCACCAGC
R:
AACAATTAGCTACAAAGGGGAAAA
Band lengths:
236-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]