RnoEX0053275 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:75904006-76018410:-
Coord C1 exon
chr16:76018333-76018410
Coord A exon
chr16:75917527-75917764
Coord C2 exon
chr16:75904006-75904179
Length
238 bp
Sequences
Splice sites
3' ss Seq
TTCCTTACGTCTACCCACAGATC
3' ss Score
9.94
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
GTTCTGTTGTCTTTAGAGTTGGGTCACTGGATTTCTGAGGAGCCTTTTGAACTCTTTGAAACCTTCCCTGCAGCTCCG
Seq A exon
ATCTGCCGACGTGAACGCCACTTATCTACCCAGCAATACCGAGGAACCCTCTTTGCCAATCAGCCGAAGATGTTCATCGCACCAGCCAGCAGCCCTCCCAGAGCCAAGCTGTGTGAACTAGTGCTCCTGTGTGGGGGCCAAGTCAGCCCAGCCCCTCAGCTGGCCAGCCTCATCATTGGTCCCTACAAGGGCAAGAGGGAAGCAAGGATCCAGTACCTGTCAGAGAAATGGGTCTTAG
Seq C2 exon
ATTCCATCACCCAACACAAGATCTGTGACTTTAACAACTACCAGTTGCTGCAATGAGACACCTATGGCTGCTGTCCTCAACACTCAAGAAAAACAAGAGAAGGAACCAGCATGCAACTTAAGGCTTGATGTCACATGTTACTTTATATACTGTGGTTTTTATCTTGAGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'16-21,'16-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(5.9=15.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTTGTCTTTAGAGTTGGGT
R:
CTCCCTCTCAAGATAAAAACCACAGT
Band lengths:
252-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]