GgaEX6032029 @ galGal3
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
NA
Coordinates
chr3:91368459-91452483:-
Coord C1 exon
chr3:91452406-91452483
Coord A exon
chr3:91369608-91369845
Coord C2 exon
chr3:91368459-91368588
Length
238 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTCCTCCAATACAGATC
3' ss Score
9.11
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTTCTGTGTTCTTTGGAATTTGGGCACTGGATCTCAGAGGAACCATATGAACTTTCTTCCAACTTCCCAGCTGCTCCT
Seq A exon
ATCTGCAGGCTTCAGCGTCACCTATCAACAGGAATCTACCAGCTGAACCTGTTTTCAAACCAGCCTGTGATGTTTGTATCTCCCACCAGCCAGCCACCCTGCAAAAAGCTGATGGAGCTTATAGAGCTGTCAGGAGGAAAGATCTGTAAAGCCCTACGGCAGGCAAAAATCTGCATAGGAAAATACCCAGGAAAGAAGTACCAGGAAATAAAATGCTTATCAGAAAAATGGATTTTAG
Seq C2 exon
ATTCAATCACTCAGCATACAGTATGTCCTATGGAAAACTACATTTTTCAGCTGTGAGCTAACTCAAGAGCTTCCATATGGCTGTAAGGAAACAAGCCTGCTTTGGCCTCAGCAACTAACTAAGCTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'45-50,'45-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(5.8=15.4)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTGTTCTTTGGAATTTGGGC
R:
ACAGCTTAGTTAGTTGCTGAGGC
Band lengths:
204-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]