GgaEX6032029 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:87966853-88050372:-
Coord C1 exon
chr3:88050295-88050372
Coord A exon
chr3:87968321-87968558
Coord C2 exon
chr3:87966853-87967301
Length
238 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTCCTCCAATACAGATC
3' ss Score
9.11
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTTCTGTGTTCTTTGGAATTTGGGCACTGGATCTCAGAGGAACCATATGAACTTTCTTCCAACTTCCCAGCTGCTCCT
Seq A exon
ATCTGCAGGCTTCAGCGTCACCTATCAACAGGAATCTACCAGCTGAACCTGTTTTCAAACCAGCCTGTGATGTTTGTATCTCCCACCAGCCAGCCACCCTGCAAAAAGCTGATGGAGCTTATAGAGCTGTCAGGAGGAAAGATCTGTAAAGCCCTACGGCAGGCAAAAATCTGCATAGGAAAATACCCAGGAAAGAAGTACCAGGAAATAAAATGCTTATCAGAAAAATGGATTTTAG
Seq C2 exon
ATTCAATCACTCAGCATACAGTATGTCCTATGGAAAACTACATTTTTCAGCTGTGAGCTAACTCAAGAGCTTCCATATGGCTGTAAGGAAACAAGCCTGCTTTGGCCTCAGCAACTAACTAAGCTGTGAATTAAATTTCTAAGAGAATGCAAATTACATATTTATAAATATAGTTTAATGTTTTTAAATTTTTCTTACTTGTGTACATGATGATTTTTGTTTCCTTTTAATAAAGTTCTTTGATGAAAGTCATCATGCTTCCATTTATTTGTTGAAGAACCTTTGGACCTAAAACTTGAGTGAGTCATTTACTCGCTGGGAGGAAGTGGAAGGATGCTTTCTAATCCCTAAGTGGATTTGATCCTGTTAAGGTGCAGGTAACTGCTGTATGCACACTGGGTGTGCATGCTGGAGCTAGCTTTGGTATAGTTAGCAGGAGCTGTGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'21-33,'21-31,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PD(4.2=15.4)
A:
PF0053321=BRCT=PU(95.7=82.5)
C2:
PF0053321=BRCT=PD(2.9=10.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCCAACTTCCCAGCTGC
R:
GGTTCTTCAACAAATAAATGGAAGCA
Band lengths:
306-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]