BtaEX6106369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4335611-4339835:+
Coord C1 exon
chr27:4335611-4335698
Coord A exon
chr27:4338625-4338739
Coord C2 exon
chr27:4339692-4339835
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTCTTCTTGTGCAGCGC
3' ss Score
10.13
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGCAGGGTAGCTGGAGTGCACATTGATGAGTCGCTGTTCCCTGCAGCCAACACTAACCAACACCTACCAAGCCTGCTTAAAAAAAAA
Seq A exon
CGCAAGTGTATGCAGCCCAAAGATTTTATTCCCAGAACACCAGAAAACGATAAAAGACTGCAAAGGAAATTTGAGAAAATGGCTAAAGAGCTGCAACAGCAGAAAACCACTCTGG
Seq C2 exon
GTACCAATGTTCCTGTTCTCTCATTTGAATCTAATGGCTCGTTGGTGTACAGTCCGACAGGTAAAGTCTGTAGGGGCCACCACAGTGCAATGAAGAAGAGGCTGCAGGAGATGAAGGAGAAACGGGAAAACCTTTCCCCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.782 C2=0.490
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=PU(34.7=83.3)
A:
PF034059=FA_desaturase_2=FE(52.8=100)
C2:
PF034059=FA_desaturase_2=PD(9.7=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAGCTGGAGTGCACATTG
R:
AGGTGGGGGAAAGGTTTTC
Band lengths:
227-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]