GgaEX6032010 @ galGal3
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
NA
Coordinates
chr3:91480727-91481693:-
Coord C1 exon
chr3:91481682-91481693
Coord A exon
chr3:91481136-91481256
Coord C2 exon
chr3:91480727-91480867
Length
121 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTACATGTCTTCTAGCAC
3' ss Score
5.07
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTATGTAAAGAA
Seq A exon
CACAAATGTATGCAGCCAAAGGACTTTGTTGAGAAAACTCCAGAAAATGATAGAAAGCTGCAGAGAAGACTGGACCGAATGGCTAAGGAATTAGCTCAGCAAAGGATAGGAATTAATGCAG
Seq C2 exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'6-8,'6-7,7-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.488 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]