DreEX6059988 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6192099-6192637:-
Coord C1 exon
chr13:6192550-6192637
Coord A exon
chr13:6192315-6192426
Coord C2 exon
chr13:6192099-6192230
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTTCTCTTTTTGCAGCAC
3' ss Score
11.05
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
ATGCAAAGAGACTAATCAGCATATAAATGAAGAACTCTTCCCTGCACAGAATGAAGAATCAAAACGACATCTTACAAACAAAAGAACA
Seq A exon
CACTGTTGCATGCAACCAAGGAATATCCCGATAAAGACTCCAGAGAATGACAGACGGCTGAAAAGAAAAATTGACAAGATGATGGAAGGCCTGGTGCCCTCATCCCCTATCG
Seq C2 exon
TTTCGGACACCTCACCTTTTATCATTGATGAGGAACGTGGAATAGTGTACAGCCCCTCTTTAAAACGCTCTGACAGCATGGCTCAACGATTGAAAGAAATGAAAGCTGGACGTGAACATCTCTCACCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.796 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGAGACTAATCAGCATATAAA
R:
CAGTGGGTGAGAGATGTTCACG
Band lengths:
219-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]