GgaEX6032010 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88078616-88079767:-
Coord C1 exon
chr3:88079692-88079767
Coord A exon
chr3:88079025-88079145
Coord C2 exon
chr3:88078616-88078756
Length
121 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTACATGTCTTCTAGCAC
3' ss Score
5.07
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGTCGAGAAACTGGAGTACGCGTTGATGAATCTTTATTTCCTGCAGTATACAATAATGATGGGTTACCACTAAAA
Seq A exon
CACAAATGTATGCAGCCAAAGGACTTTGTTGAGAAAACTCCAGAAAATGATAGAAAGCTGCAGAGAAGACTGGACCGAATGGCTAAGGAATTAGCTCAGCAAAGGATAGGAATTAATGCAG
Seq C2 exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.512 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
PF070836=DUF1351=PU(43.0=90.2)
C2:
PF070836=DUF1351=FE(54.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAGAAACTGGAGTACGCG
R:
GATTTTCTCTTTTCTCCTTCATCTCA
Band lengths:
203-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]