RnoEX0053277 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76083886-76088335:-
Coord C1 exon
chr16:76088248-76088335
Coord A exon
chr16:76085304-76085418
Coord C2 exon
chr16:76083886-76084008
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTCATAACCTTTTTACCTAGCAC
3' ss Score
4.33
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ATGCAGGATGGCTGGAGCACGTGTCGATGAATCTTTGTTCCCTGCAGTGAATACCGATGAACATTTACCAAACCTAATTAGGAGAAAA
Seq A exon
CACAAGTGTATGCAGCCCAAAGATTTTATTCCTAAAACACCAGAAAATGACAAAAGACTTCAAAAGAAATTCGAGAAAATGGCTGAAGAGCTACAAAGGCAAAAGGCAGCTCTAG
Seq C2 exon
ATGACGACGTCCCTGTCCTCATGTTTGAGTCCCCTCAGTCACTGGTATACAGCTCCCCAGTAAACATGATGAAGAAGAGACTACAGGAGATGAAGGAGAAGAGGGAAAACCTTTCCCCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.744 C2=0.571
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=PU(21.9=70.0)
A:
PF034059=FA_desaturase_2=FE(39.6=100)
C2:
PF034059=FA_desaturase_2=PD(36.5=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGGATGGCTGGAGCA
R:
AAAGGTTTTCCCTCTTCTCCTTCA
Band lengths:
202-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]