BtaEX6106729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010355 | VPS37A
Description
Bos taurus vacuolar protein sorting 37 homolog A (S. cerevisiae) (VPS37A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046161]
Coordinates
chr27:19023369-19026095:-
Coord C1 exon
chr27:19026037-19026095
Coord A exon
chr27:19025889-19025957
Coord C2 exon
chr27:19023369-19023512
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTTTGATTTTCTCTTTTAGTAT
3' ss Score
10.06
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAAAAATCTCCTTTTGGAGCCCAGCTTGGAAGCCAAAAGGCAAACTGTTTTAGATAAG
Seq A exon
TATGAATTACTTACACAAATGAAATCAACTTTTGAAAAGAAGATGCAAAGGCAGCATGAACTTAGTGAG
Seq C2 exon
AGCTGTAGTGCAAGTGCTCTACAGGCAAGATTAAAAGTAGCTGCACATGAAGCTGAGGAAGAATCTGATAATATTGCAGAAGATTTCTTGGAGGGAAAAACAGATATAGATGATTTTCTCAGTAGCTTCATGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010355-'12-11,'12-8,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.261 C2=0.146
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGAAGCCAAAAGGCAAA
R:
TCTCTTTTCCATGAAGCTACTGAGA
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]