RnoEX0098338 @ rn6
Exon Skipping
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54863597-54868184:-
Coord C1 exon
chr16:54868126-54868184
Coord A exon
chr16:54867981-54868049
Coord C2 exon
chr16:54863597-54863740
Length
69 bp
Sequences
Splice sites
3' ss Seq
CATTTTATGTTTTCTTTTAGTAT
3' ss Score
9.26
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GAAAAAATCTCCTTTTGGAGCATAGCCTGGAAACCAAAAGGCAGGCCGTCTTAGATAAG
Seq A exon
TATGAATTACTTATACAAATGAAATCTACCTTTGAAAAGAAGATGCAAAGGCAGCATGAACTCAGCGAG
Seq C2 exon
AGTTGTAGTGCAAGTGCCCTACAGGCAAGATTGAAAGTAGCCGCACATGAGGCTGAGGAGGAGTCTGATAATATTGCCGAAGATTTCCTGGAGGGAAAAACTGAAATAGATGATTTTCTCAATAGCTTCAAGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.097
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGAAACCAAAAGGCAG
R:
TGTTCTCTTTTCCTTGAAGCTATTGA
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]