HsaEX6079617 @ hg38
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17280239-17284616:+
Coord C1 exon
chr8:17280239-17280297
Coord A exon
chr8:17280393-17280443
Coord C2 exon
chr8:17284473-17284616
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGTATGAATTACTTACACAGATG
3' ss Score
3.17
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAAAAATCTCCTTTTGGAGCCCAGCTTGGAAGCCAAAAGACAAACTGTTTTAGATAAG
Seq A exon
ATGAAGTCCACTTTCGAAAAGAAGATGCAAAGGCAGCATGAACTTAGTGAG
Seq C2 exon
AGCTGTAGTGCAAGTGCCCTTCAGGCAAGATTGAAAGTAGCTGCACATGAAGCTGAGGAAGAATCTGATAATATTGCAGAAGACTTCTTGGAGGGAAAGATGGAAATAGATGATTTTCTCAGTAGCTTCATGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-'31-26,'31-25,32-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.261 C2=0.125
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGAGCCCAGCTTGGAAG
R:
TCCCTCCAAGAAGTCTTCTGCA
Band lengths:
143-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains