DreEX0084476 @ danRer10
Exon Skipping
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15783539-15784800:+
Coord C1 exon
chr1:15783539-15783597
Coord A exon
chr1:15783805-15783873
Coord C2 exon
chr1:15784657-15784800
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTTTCTACTGTAGTAT
3' ss Score
7.92
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGAAGAACTTGCAGCTTGAGCCACAGTTGGAGGGCAAGAGACAAGAGATGCTGTGTAAA
Seq A exon
TATGAACAGTTAACCCAGATGAAGTCGGTATTTGAAACCAAAATGCAAAGACAACATGAGCTCAGTGAG
Seq C2 exon
AGCTGCAGTTTGAGTGCGTTGCAGGCCAGATTAAAGGTAGCAGCCCATCAGGCTGAAGAAGAATCTGAGGAGACTGCAGAGAACTTTCTGGAAGGAAAAACAGAGATCGACGACTTCCTAGCCAGCTTTATGGAAAAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.087 C2=0.292
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTTGCAGCTTGAGCCA
R:
TGGCTAGGAAGTCGTCGATCT
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]