DmeEX6000084 @ dm6
Exon Skipping
Gene
FBgn0016038 | mod(r)
Description
The gene Vacuolar protein sorting 37A is referred to in FlyBase by the symbol DmelVsp37A (CG17828, FBgn0016038). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (2 unique). Gene sequence location is X:621530..623051. Its molecular function is described by: . It is involved in the biological process described with: endosome transport via multivesicular body sorting pathway; ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; protein targeting to vacuole; protein targeting to membrane. 8 alleles are reported. The phenotype of these alleles manifest in: wing. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes.
Coordinates
chrX:621891-623051:+
Coord C1 exon
chrX:621891-622146
Coord A exon
chrX:622207-622358
Coord C2 exon
chrX:622446-623051
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGTATTCCAATCCAGGAG
3' ss Score
8.41
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGCCGACTACACCACAGGATCTTGCCCTTGCCCACTCTCTTGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAGGAGGCCGGCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGACGAACTGAAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCGAGGAGATGTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATGGACCAGGTGGAGATTATATCAA
Seq A exon
GAGAGAACGAGTGCAAGGGCATTCATCTGGTAGAGCTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACCTAGGCGAGAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGATGAATACGCGCCTCAGCATATCAGG
Seq C2 exon
ATTGCAGCTTCCAATGCCGATGGCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGACCGACGTGCAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGTACCGAGCGCAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCTGGAGCGGGCCGGTATCTAGGATTGCCGTGACACTCCCTGGCCGTGCCATCCAGAGCACGGTCCTCCCACTCCTCGCACTCCTCCCACACCGCCACGATCCGCGTCGCAATAGTAGAGAATATCAATGTTAGTAAATAGAGAAGTTAAGCCAGAGATGGGGCGACATAATCATGGCACACACGGCCACGCATTCCCAGAACAGAAAGCAAAACCTTGTTGAAGTAATAAGAAGGTGCACTAGTTGTTCGTTTCCCAAGATCGTTTACTTGGGAAGAGGGTCTTGTTATTCTATCCGTACCCCGAAACGAAGCACTATGTGCAACAGAACGCAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0016038-'2-7,'2-5,3-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.010 C2=0.049
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(31.3=54.7)
A:
PF072008=Mod_r=FE(34.2=100)
C2:
PF072008=Mod_r=PD(32.2=77.0)
Main Inclusion Isoform:
FBpp0088664

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0088665, FBpp0088666, FBpp0088667, FBpp0307122, FBpp0307123
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACGAACTGAAACAGCT
R:
TGCGCTCGGTACTGATCTTCT
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)