GgaEX1063323 @ galGal4
Exon Skipping
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62746414-62747850:-
Coord C1 exon
chr4:62747792-62747850
Coord A exon
chr4:62747637-62747705
Coord C2 exon
chr4:62746414-62746557
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTTCTTTCTTTCAGTAT
3' ss Score
10.44
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AAAAAAATTTGTTGCTGGAGCCCAGTCTAGAGGCAAAAAGACAGACAGTGTTGGATAAA
Seq A exon
TATGAGCAACTCACACAGATGAAAGCAGCCTTTGAAAAAAAGATGCAAAGACAGCATGAACTTAATGAG
Seq C2 exon
AGTTGCAGTCCAAGTGCTCTGCAAGCCAGACTTAAAGTAGCTGCTCATGAAGCTGAAGAGGAATCTGACACTATTGCAGAAGACTTCTTGGAAGGCAAAACAGAAATAGATGACTTTCTTAGTAGCTTCATGGAAAAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-'16-14,'16-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.435 C2=0.208
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCAGTCTAGAGGCAAA
R:
TCCATGAAGCTACTAAGAAAGTCA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]