MmuEX1027740 @ mm10
Exon Skipping
Gene
ENSMUSG00000031600 | Vps37a
Description
vacuolar protein sorting 37A [Source:MGI Symbol;Acc:MGI:1261835]
Coordinates
chr8:40540889-40543953:+
Coord C1 exon
chr8:40540889-40540947
Coord A exon
chr8:40541025-40541093
Coord C2 exon
chr8:40543810-40543953
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATTTTATGTTTTCTTTTAGTAT
3' ss Score
8.56
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAAAAAATCTCCTTTTGGAACATAGCTTGGAAGGCAAAAGGCAAACCGTTTTAGATAAG
Seq A exon
TATGAATTACTTCTACAAATGAAATCTACCTTTGAAAAGAAGATGCAAAGGCAACATGAACTCAGTGAG
Seq C2 exon
AGTTGTAGTGCAAGTGCTCTACAGGCAAGATTGAAAGTAGCTGCACACGAAGCTGAGGAAGAATCGGATAATATTGCTGAAGACTTCTTGGAGGGAAAAACTGAAATAGATGATTTTCTCAATAGCTTCAAGGAAAAGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031600_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.104
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(12.7=100)
A:
PF072008=Mod_r=FE(14.7=100)
C2:
PF072008=Mod_r=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAAAGGCAAACCGTTTT
R:
TGTTCTCTTTTCCTTGAAGCTATTGA
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types