BtaEX6108015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1798975-1801320:-
Coord C1 exon
chr25:1801192-1801320
Coord A exon
chr25:1800876-1801070
Coord C2 exon
chr25:1798975-1799162
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCCGCGCACGCGCAGGTG
3' ss Score
7.39
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ACAGAAGTGTACACCCGGACGGCGGCGCTCCCTGAAGACCAGGACGTGATGGACGAAAGGAACCGCATCCTGTCCCCCAGCCTGGACTCCCTGCTGGACACACCTCTGATCATCAAGGAGCTCTCCAAG
Seq A exon
GTGTATGAGCAGCGGGCGCCGCTCCTCGCTGTGGACAAGGTGTCCCTCGCGGTGCAGAAAGGGGAGTGCTTCGGCTTGCTGGGCTTCAACGGAGCCGGGAAAACCACGACTTTCAAGATGCTGACCGGGGAGGAGACCATCACCTCTGGGGACGCCTTTGTTGGGGGCTACAGCATCAGCTCTGACATCGGGAAG
Seq C2 exon
GTGCGGCAGCGAATCGGCTACTGTCCCCAGTTCGATGCCCTGCTGGACCACATGACAGGCCGGGAGACCCTGGTCATGTTCGCCCGGCTCCGGGGCATCCCCGAGCGCCACATTGGCGCATGCGTGGAGAACACGCTGCGGGGTCTGCTCCTGGAGCCGCACGCCAACAAGCTGGTCAGGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'29-34,'29-32,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAAAGGAACCGCATCC
R:
CTGACCAGCTTGTTGGCGT
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]