RnoEX0004857 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13775338-13778026:+
Coord C1 exon
chr10:13775338-13775466
Coord A exon
chr10:13775599-13775793
Coord C2 exon
chr10:13777839-13778026
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGGCTGGCATTTCACAGGTG
3' ss Score
6.9
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCAGAATTGCAGAACCGGACATCAGTGCTTCCTGAGGACCAGGATGTAGCTGATGAGAGGAGCCGAGTCCTGGTCCCTAGCTTGGACTCCATGCTTGACACACCGCTGATCATCAATGAGCTCTCCAAG
Seq A exon
GTGTATGACCAGCGTGCACCGCTCCTTGCCGTGGACAGGATCTCCCTTGCAGTCCAGAAAGGGGAGTGCTTTGGCCTGTTGGGTTTCAATGGAGCTGGAAAAACTACAACATTCAAAATGCTGACTGGGGAGGAGACGATCACCTCGGGGGATGCCTTTGTTGGTGGTTACAGCATCAGTTCTGATATTGGGAAG
Seq C2 exon
GTACGGCAGCGGATGGGCTACTGCCCCCAGTTTGATGCACTGCTTGATCACATGACTGGCAGGGAAATGCTGGTCATGTATGCACGGCTCCGAGGCATCCCAGAGCGTCTCATCGATGCCTGTGTGGAGAACACTCTGCGGGGTCTGCTCCTGGAGCCACATGCCAATAAACTGGTCAAGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAACCGGACATCAGTG
R:
CCACACAGGCATCGATGAGAC
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]