DreEX0009927 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12529848-12538193:+
Coord C1 exon
chr3:12529848-12529982
Coord A exon
chr3:12537125-12537319
Coord C2 exon
chr3:12538006-12538193
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATCTGTGTTTGTCTCACTAGATG
3' ss Score
10.03
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GCTCTGCTGTTAGCAGAAGAAGCTCTTCAACCTGAGGACCGAGACGTTGCAGAGGAGAGGAAGAGGGTTTTAGAGTGTCAGCCGGTGGTGGAGTCTATGGTGGGCAGCCCGCTCGTTGTACAGGAGCTCAGCAAG
Seq A exon
ATGTATTCAGGTGGGCAGTCGCTGTTAGCAGTGGACCGTCTCTCATTGGCCGTTGGGAAGGGCGAGTGCTTTGGTTTGCTGGGATTTAATGGAGCGGGGAAAACTACAACATTCAAAATGCTGACGGGAGATGAAAGCATCACTTCAGGGGACGCGTTCATTGATGGCTACAGCATCCTTACAGATGTCAAAAAG
Seq C2 exon
GTGCAGCAGAGAATCGGCTACTGCCCCCAGTTCGATGCGGTGCTGGATCACATGACAGGACGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCAGAGAAATATGTCACCGCCTGTGTGGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCACGCTGACAAACTCGTCCGCAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'30-31,'30-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTTAGAGTGTCAGCCGG
R:
GTTTGTCAGCGTGAGGTTCGA
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]