GgaEX1005379 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13570529-13571746:-
Coord C1 exon
chr14:13571612-13571746
Coord A exon
chr14:13571299-13571493
Coord C2 exon
chr14:13570529-13570716
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTTGCCATCCCCAGGTC
3' ss Score
10.13
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGCACTGCTGAACAGCGTGTCTGTGCTGCCTGAGGACCGGGACGTGGCAGATGAGAGGAAGAAGGTTTTGGAGTCGCCACCGGAGCTGCTGTCATCACTGAGCAGCCCTCTGGTCATCAAGGAGCTCACTAAG
Seq A exon
GTCTATGACAGCCGGGAATCCCTGCTGGCAGTGGACAGGATCTCTTTGGCAGTCAGCAAAGGGGAATGCTTTGGCCTTCTTGGCTTCAATGGAGCGGGCAAAACCACCACGTTCAAGATGCTGACGGGTGATGAGAGCATCACGTCGGGGGATGCCTTTGTGGATGGCCACAGCATTCTGGCCAACATCAAGAAG
Seq C2 exon
GTGCAGCAGCGGATCGGCTACTGCCCGCAGTTTGATGCCCTGCTGGACCACATGACAGGCCGTGAGACACTCAGCATGTATGCCCGGCTGCGGGGCATCCCCGAGCGCTACATCGGCAGCTGCGTGGAGAACATGCTGAGGGGGCTGCTCCTGGAGCCCCACGCCGACAAGCTTGTCAGGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'30-41,'30-39,31-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCTGTGCTGCCTGAG
R:
CTCAGCATGTTCTCCACGCAG
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]