BtaEX6108018 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1930877-1943276:+
Coord C1 exon
chr25:1930877-1931011
Coord A exon
chr25:1934373-1934567
Coord C2 exon
chr25:1943089-1943276
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTGGCTATCTCAGGTC
3' ss Score
7.67
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAAAAACAGGTTGTTTTGCAGAATGCAGAGTCTGTGCCTGGAGACCAAGATGTGGAAGAGGAAGCAAAAATGATCAAGAACTCTTGGGAAGATCTGTGTAAGAAAAACCCACTGGTCCTTAAAGAACTGTCTAAG
Seq A exon
GTCTATTCCAGGAAGGTGCCTCCACTGGCTGTGAACAAGGTTTCCTTCACTGTTCAAGCAGAGGAGTGCTTTGGTCTTCTTGGCCTCAATGGAGCTGGGAAAACTACCATTTTCAAGATATTGACTGGGGAAGAGTCTATCACCTCTGGGGACGCCTTTGTCAACAGCATCAGCGTCAGCTCTGACTTGAGGAAG
Seq C2 exon
GTGCGACAGTGGATCGGCTACTGTCCCCAGGTCGATGCCCTGCTGGACCACATGACGGGCAAGGAGACGCTGGTCATGTTCTCCCGGCTCCGGGGCATCCCTGAGCGTCACATCAGCTCCTGTGTGGACCAAATTCTTGATGACTTGCTCATGTACACGTACGCCGACAAATTGGTGAAGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTTGTTTTGCAGAATGCA
R:
CTGATGTGACGCTCAGGGATG
Band lengths:
247-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]