MmuEX6075627 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24267550-24280557:-
Coord C1 exon
chr17:24280435-24280557
Coord A exon
chr17:24279048-24279242
Coord C2 exon
chr17:24267550-24267737
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTGTGTCTCTCAGGTC
3' ss Score
11.46
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGAATGATCTTTGATGTAGCAGAACCTGAAGATGAAGATGTTCTGGAGGAGGCGGAAACCATCAAGCGTTATTTGGAAACGTTAGTAAAGAAAAACCCGCTTGTTGTTAAAGAAGTGTCAAAG
Seq A exon
GTCTATAAAGACAAGGTACCCCTGTTGGCTGTGAACAAGGTGTCCTTTGTTGTTAAAGAAGAAGAATGCTTTGGCCTTCTTGGTCTCAATGGAGCTGGGAAGACTTCCATTTTCAACATGCTGACCAGCGAGCAGCCCATCACCTCTGGGGATGCCTTTGTCAAGGGTTTCAACATCAAGTCTGACATAGCGAAG
Seq C2 exon
GTGCGGCAGTGGATTGGTTACTGTCCTGAGTTTGATGCCTTGCTAAACTTCATGACAGGACGAGAGATGCTTGTCATGTATGCCCGTATCCGGGGCATCCCTGAATGCCACATTAAAGCCTGTGTCGACCTGATCCTTGAGAACTTACTCATGTGTGTGTGTGCAGACAAGCTGGTGAAGACCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'33-53,'33-51,35-53=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGCGGAAACCATCAAG
R:
CTTCACCAGCTTGTCTGCACA
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types