RnoEX0004815 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13632836-13648422:-
Coord C1 exon
chr10:13648300-13648422
Coord A exon
chr10:13646809-13647003
Coord C2 exon
chr10:13632836-13633023
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTGTGTCGCTCAGGTC
3' ss Score
8.01
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGGATGCTCTTGAATGTAACAGGGGCTGAAGATGAAGACGTTCTAGAAGAGGCAGAAAACATCAAGTATCATTTGGATACACTGATAAAGAAAAGTCCACTTGTCGTTAAAGAATTGTCAAAG
Seq A exon
GTCTATAAAGAGAAGGTGCCCCTGTTGGCTGTGAACAAGGTGTCCTTTGTCGTTAAAGAAAAAGAATGCTTTGGCCTTCTTGGCCTCAATGGAGCTGGGAAGACGTCCATTTTCAACATGCTGACCAGGGAGCAGCCCATCACTTCAGGGGATGCCTTTGTCAAGGGTTTCAACATCAGGACTGACATGGCGAAG
Seq C2 exon
GTGCAGCAGTGGATTGGTTACTGTCCTGAGTTTGATGCCCTGCTAAACTTCATGACAGGAAGAGAGATGCTTGTCATGCATGCCCGTATCCGGGGCATCCCCGAGTGCCACATCAAAACCTGTGTGGACATGATCCTTGAGAACTTACTCATGTGCGTGTATGCAGACAAGCTGGTGAAGACCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'40-45,'40-41,41-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(37.2=83.1)
C2:
PF0000522=ABC_tran=FE(42.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTGAATGTAACAGGGGC
R:
ACAGGTTTTGATGTGGCACTCG
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]