BtaEX6108682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14196508-14211315:+
Coord C1 exon
chr25:14196508-14196656
Coord A exon
chr25:14209637-14209773
Coord C2 exon
chr25:14211136-14211315
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTGCTGGTCTCTCACCCAGGGC
3' ss Score
8.21
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGAAGTTTAAAACACAGCATTCTGAAGGCTACCGGCAGATCTCAGCCTTAGAGGATGACCTTGCCCAGACGAAAGCCATAAAAGATAAACTGCAGAAGTACATCAGAGAGCTGGAGCAAGCCAACGATGACCTGGAAAGAGCCAAACG
Seq A exon
GGCCACGATCATGTCACTGGAGGACTTTGAACAGCGTTTGAATCAAGCCATAGAAAGAAACGCCTTCCTGGAGAGCGAACTGGACGAGAAGGAGAATCTCCTGGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAG
Seq C2 exon
ATTTGCGGCAGGAATTGGCTGTGCAGCAAAAGCAGGAGAAACCCAGGACGCCCATGCCCAGCTCAGTGGACGCTGAGAGGACCGACACAGCAGTGCAGGCCACTGGCTCTGTGCCGTCCACCCCCATAGCTCATCGAGGACCCAGCTCTAGTTTAAACACTCCTGGGACCTTCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.511 C2=1.000
Domain overlap (PFAM):
C1:
PF057016=WEMBL=FE(24.7=100)
A:
PF057016=WEMBL=FE(23.2=100),PF048808=NUDE_C=PU(20.6=87.2)
C2:
PF057016=WEMBL=PD(14.1=45.9),PF048808=NUDE_C=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTTGCCCAGACGAAAG
R:
ACTAGAGCTGGGTCCTCGATG
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]