HsaEX0042206 @ hg38
Exon Skipping
Gene
ENSG00000072864 | NDE1
Description
nudE neurodevelopment protein 1 [Source:HGNC Symbol;Acc:HGNC:17619]
Coordinates
chr16:15677801-15691323:+
Coord C1 exon
chr16:15677801-15677949
Coord A exon
chr16:15687375-15687511
Coord C2 exon
chr16:15691144-15691323
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTCTCTTCGCCAGCGC
3' ss Score
8.04
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAGAAGTTTGAAGTGCAGCACTCTGAAGGCTACCGGCAGATCTCAGCCTTGGAGGATGACCTCGCGCAGACCAAAGCCATTAAAGACCAATTGCAGAAATACATCAGAGAGCTGGAGCAAGCAAATGACGACCTGGAAAGAGCCAAGCG
Seq A exon
CGCCACGATCATGTCTCTCGAAGACTTTGAGCAGCGCTTGAATCAGGCCATCGAAAGAAATGCCTTCCTGGAAAGTGAACTTGATGAAAAAGAGAATCTCCTGGAATCTGTTCAGAGACTGAAGGATGAAGCCAGAG
Seq C2 exon
ATTTGCGGCAGGAACTGGCCGTGCAGCAGAAGCAGGAGAAACCCAGGACCCCCATGCCCAGCTCAGTGGAAGCTGAGAGGACAGACACAGCTGTGCAGGCCACGGGCTCCGTGCCGTCCACGCCCATTGCTCACCGAGGACCCAGCTCAAGTTTAAACACACCTGGGAGCTTCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072864-'25-47,'25-45,30-47
Average complexity
S
Mappability confidence:
91%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.570 C2=1.000
Domain overlap (PFAM):
C1:
PF040127=PspA_IM30=PD(18.4=29.2)
A:
PF048808=NUDE_C=PU(20.5=87.2)
C2:
PF048808=NUDE_C=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCAGACCAAAGCCATTAA
R:
TAAACTTGAGCTGGGTCCTCG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development