RnoEX0058756 @ rn6
Exon Skipping
Gene
ENSRNOG00000058007 | Nde1
Description
nudE neurodevelopment protein 1 [Source:RGD Symbol;Acc:620038]
Coordinates
chr10:868342-893874:-
Coord C1 exon
chr10:893726-893874
Coord A exon
chr10:878473-878609
Coord C2 exon
chr10:868342-868521
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTTCTTCTGCCCAGAGC
3' ss Score
7.56
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GAGAAGTTTGAAATGCAGCATTCAGAGGGTTACCGGCAGATCTCGGCCTTGGAGGATGACCTGGCTCATACAAAAGCCATTAAAGACCAACTGCAGAAATACATCAGGGAGCTGGAACAAGCCAATGATGACCTGGAAAGAGCCAAACG
Seq A exon
AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAAAATCTTCTAGAATCTGTGCAGAGACTGAAGGATGAAGCTCGAG
Seq C2 exon
ATCTTCGGCAGGAATTGGCTGTGCAGCAGAAGCAAGACAAGCCCCGGACACCCATGCCCAGCTCAGGGGAAACCAAAAGGACAGACATGGCTGTACAGGCCACAGGCTCTGCACCATCTACTCCAATAACTCACCAAGGATCCAGCTCTGGTTTGAACACACCAGAAACGTTCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058007-'2-6,'2-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=0.638 C2=1.000
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(1.8=2.0)
A:
PF048808=NUDE_C=PU(20.3=87.2)
C2:
PF048808=NUDE_C=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGTTACCGGCAGATCTC
R:
AGTAGATGGTGCAGAGCCTGT
Band lengths:
248-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]