GgaEX1039136 @ galGal3
Exon Skipping
Gene
ENSGALG00000006500 | NDE1_CHICK
Description
NA
Coordinates
chr14:7615749-7617545:+
Coord C1 exon
chr14:7615749-7615897
Coord A exon
chr14:7616206-7616342
Coord C2 exon
chr14:7617366-7617545
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTACTCTTTTTCAGAGC
3' ss Score
10.79
5' ss Seq
GAGGTTCGA
5' ss Score
2.89
Exon sequences
Seq C1 exon
GAAAAGTTTGAAATGCAGCATTCAGAATGGTACAGGCAAGTCTCTGCACTGGAAGATGACTTGGCACAGACAAAAGCTATTAAAGATCAACTTCAGAAATACATTCGAGAACTTGAGCAAGCAAATGATGACTTGGAAAGAGCAAAAAG
Seq A exon
AGCCGCTATAATGTCTCTTGAGGATTTTGAGCAGCGCCTAAACCAGGCTATTGAAAGAAATGCTTTTCTGGAGAGTGAGCTGGATGAGAAAGAAAACCTTCTGGAGTCTGTGCAACGTCTGAAAGATGAAGCTAGAG
Seq C2 exon
ATCTACGACAAGAGCTTGCAGTGCAGCAGAAACAGGAGAAACCCAAAACACCAATGCGAACTAGCCTGGAAACAGAAAGAACAGACACTGCAGTTCAAGCATCCTTATCTTTGCCTTCAACTCCCTCTCTGCACCGAGCACCCAACATCAACATACCCACCCCTGCAACATTTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.213 C2=0.885
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PD(1.7=2.0)
A:
PF048808=NUDE_C=PU(20.7=87.2)
C2:
PF048808=NUDE_C=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGAAGATGACTTGGCA
R:
ATGTTGATGTTGGGTGCTCGG
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]