DreEX0049750 @ danRer10
Exon Skipping
Gene
ENSDARG00000103902 | nde1
Description
nudE neurodevelopment protein 1 [Source:ZFIN;Acc:ZDB-GENE-050913-61]
Coordinates
chr3:36538188-36538851:+
Coord C1 exon
chr3:36538188-36538336
Coord A exon
chr3:36538413-36538549
Coord C2 exon
chr3:36538648-36538851
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATCTATCTTACTCTTACAGGGC
3' ss Score
10.52
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GAGAAGTATGAAACGCAGCACTCAGAGGCAGTCAGGCAGATCTCGACTCTAGAAAGAGACCTGGCAGAGACCACAGCCATCAAGGACCAACTGCACAAGTATATCCGAGAGTTGGAGCAGTCCAATGATGACCTGGAAAGAGCTAAGAG
Seq A exon
GGCAACTATAATGTCACTTGAAGACTTTGAGCAGAGAATGAATCACGTTATAGAGAGAAATGCCTTCCTTGAGAGCGAGCTTGATGAAAAAGAGAATCTTCTAGAGTCAGTGCAGAGGTTAAAAGATGAAGCTAGAG
Seq C2 exon
ATTTGAGACAGGAGCTGGCTGTTCAGCAGAAACAGGAGCGCAAGCCATCAATCAGCCTGGCTAAAGATGCGGAGAAGCCAGAAGCCACACCCGCAAGACCATCCTCTGTTGTTAACTCCGCCCTCCCGTCTCTCCTTGCCACACCCTCCAGACCTCCAGGATCAGGGAGTGCATTCAATACCCCGTCAGCATCCTACAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103902-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.447 C2=1.000
Domain overlap (PFAM):
C1:
PF065827=DUF1136=WD(100=46.0),PF151481=Apolipo_F=PU(31.6=86.0),PF0252012=DUF148=PU(44.9=80.0)
A:
PF151481=Apolipo_F=FE(33.8=100),PF0252012=DUF148=FE(51.7=100),PF048808=NUDE_C=PU(24.3=87.2)
C2:
PF151481=Apolipo_F=PD(33.8=66.7),PF0252012=DUF148=PD(2.2=2.9),PF048808=NUDE_C=FE(40.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCACAGCCATCAAGGA
R:
CTGATCCTGGAGGTCTGGAGG
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]