HsaEX0042207 @ hg38
Exon Skipping
Gene
ENSG00000072864 | NDE1
Description
nudE neurodevelopment protein 1 [Source:HGNC Symbol;Acc:HGNC:17619]
Coordinates
chr16:15687375-15694256:+
Coord C1 exon
chr16:15687375-15687511
Coord A exon
chr16:15691144-15691323
Coord C2 exon
chr16:15694165-15694256
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAATCCTTTTTCTGGCACAGATT
3' ss Score
6.39
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CGCCACGATCATGTCTCTCGAAGACTTTGAGCAGCGCTTGAATCAGGCCATCGAAAGAAATGCCTTCCTGGAAAGTGAACTTGATGAAAAAGAGAATCTCCTGGAATCTGTTCAGAGACTGAAGGATGAAGCCAGAG
Seq A exon
ATTTGCGGCAGGAACTGGCCGTGCAGCAGAAGCAGGAGAAACCCAGGACCCCCATGCCCAGCTCAGTGGAAGCTGAGAGGACAGACACAGCTGTGCAGGCCACGGGCTCCGTGCCGTCCACGCCCATTGCTCACCGAGGACCCAGCTCAAGTTTAAACACACCTGGGAGCTTCAGACGTG
Seq C2 exon
GCCTGGACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTGTGGGAGACCTACTGCGGAAAGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072864-'30-53,'30-47,37-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=1.000 C2=0.532
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.5=87.2)
A:
PF048808=NUDE_C=FE(30.0=100)
C2:
PF048808=NUDE_C=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACGATCATGTCTCTCGAA
R:
CGACTTTCCGCAGTAGGTCTC
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development