GgaEX1039137 @ galGal4
Exon Skipping
Gene
ENSGALG00000006500 | NDE1
Description
Nuclear distribution protein nudE homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZMC9]
Coordinates
chr14:7550589-7552481:+
Coord C1 exon
chr14:7550589-7550725
Coord A exon
chr14:7551749-7551928
Coord C2 exon
chr14:7552390-7552481
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTGCTTCCCTCACAGATC
3' ss Score
11
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
AGCCGCTATAATGTCTCTTGAGGATTTTGAGCAGCGCCTAAACCAGGCTATTGAAAGAAATGCTTTTCTGGAGAGTGAGCTGGATGAGAAAGAAAACCTTCTGGAGTCTGTGCAACGTCTGAAAGATGAAGCTAGAG
Seq A exon
ATCTACGACAAGAGCTTGCAGTGCAGCAGAAACAGGAGAAACCCAAAACACCAATGCGAACTAGCCTGGAAACAGAAAGAACAGACACTGCAGTTCAAGCATCCTTATCTTTGCCTTCAACTCCCTCTCTGCACCGAGCACCCAACATCAACATACCCACCCCTGCAACATTTAGGAGAG
Seq C2 exon
GTTTTGAGGACAGTTACTGTGCAACCCCTCTCACACCTGCTGCCAGAATATCTGCACTTAACATCATGGGAGACTTGCTGCGAAAAGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.885 C2=0.032
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.7=87.2)
A:
PF048808=NUDE_C=FE(30.3=100)
C2:
PF048808=NUDE_C=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTATAATGTCTCTTGAGGA
R:
CCCTACTTTTCGCAGCAAGTCT
Band lengths:
228-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]