HsaEX0042207 @ hg19
Exon Skipping
Gene
ENSG00000072864 | NDE1
Description
nudE nuclear distribution E homolog 1 (A. nidulans) [Source:HGNC Symbol;Acc:17619]
Coordinates
chr16:15781232-15788113:+
Coord C1 exon
chr16:15781232-15781368
Coord A exon
chr16:15785001-15785180
Coord C2 exon
chr16:15788022-15788113
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAATCCTTTTTCTGGCACAGATT
3' ss Score
6.39
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CGCCACGATCATGTCTCTCGAAGACTTTGAGCAGCGCTTGAATCAGGCCATCGAAAGAAATGCCTTCCTGGAAAGTGAACTTGATGAAAAAGAGAATCTCCTGGAATCTGTTCAGAGACTGAAGGATGAAGCCAGAG
Seq A exon
ATTTGCGGCAGGAACTGGCCGTGCAGCAGAAGCAGGAGAAACCCAGGACCCCCATGCCCAGCTCAGTGGAAGCTGAGAGGACAGACACAGCTGTGCAGGCCACGGGCTCCGTGCCGTCCACGCCCATTGCTCACCGAGGACCCAGCTCAAGTTTAAACACACCTGGGAGCTTCAGACGTG
Seq C2 exon
GCCTGGACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTGTGGGAGACCTACTGCGGAAAGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072864-'8-12,'8-10,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=1.000 C2=0.555
Domain overlap (PFAM):
C1:
PF077956=DUF1635=FE(31.9=100),PF0030915=Sigma54_AID=WD(100=52.2),PF048808=NUDE_C=PU(25.6=87.0)
A:
PF077956=DUF1635=FE(41.8=100),PF048808=NUDE_C=FE(37.8=100)
C2:
PF077956=DUF1635=PD(18.4=83.9),PF048808=NUDE_C=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACGATCATGTCTCTCGAA
R:
CGACTTTCCGCAGTAGGTCTC
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)