MmuEX6060954 @ mm10
Exon Skipping
Gene
ENSMUSG00000022678 | Nde1
Description
nudE neurodevelopment protein 1 [Source:MGI Symbol;Acc:MGI:1914453]
Coordinates
chr16:14183476-14188404:+
Coord C1 exon
chr16:14183476-14183612
Coord A exon
chr16:14185694-14185873
Coord C2 exon
chr16:14188313-14188404
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGGACCCTTTCCCTGTGCAGATC
3' ss Score
10.73
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAGAATCTTCTAGAATCTGTGCAGAGGCTGAAGGATGAAGCCCGAG
Seq A exon
ATCTGCGGCAGGAATTGGCTGTGCAACAGAAGCAAGACAAGCCCCGGACACCCATGCCAGGCTCAGGGCAAGCCAAGAGGACAGACATGGCTGTGCAGGCCACAGGCTCTGTACCGTCTACTCCAGTAGCTCACCGAGGACCTAGCTCTGGTTTGAACACACCAGGAATGTTCAGACGTG
Seq C2 exon
GTCTGGACAGCTCCACTAGTGGGACGCCACTCACACCTGCAGCCCGGATATCAGCCCTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022678_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=1.000 C2=0.555
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PD(3.8=30.0),PF040127=PspA_IM30=PD(11.6=80.0),PF088265=DMPK_coil=PD(1.8=10.0),PF0017016=bZIP_1=PD(6.4=30.0)
A:
PF057016=WEMBL=PD(10.4=32.8),PF048808=NUDE_C=FE(30.5=100)
C2:
PF048808=NUDE_C=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAATCATGTCCCTGGAA
R:
CAACTTTCCGAAGCAGGTCCC
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types