RnoEX6046043 @ rn6
Exon Skipping
Gene
ENSRNOG00000058007 | Nde1
Description
nudE neurodevelopment protein 1 [Source:RGD Symbol;Acc:620038]
Coordinates
chr10:864812-878609:-
Coord C1 exon
chr10:878473-878609
Coord A exon
chr10:868342-868521
Coord C2 exon
chr10:864812-864903
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGGATCCTTTCCCTGTACAGATC
3' ss Score
9.95
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAAAATCTTCTAGAATCTGTGCAGAGACTGAAGGATGAAGCTCGAG
Seq A exon
ATCTTCGGCAGGAATTGGCTGTGCAGCAGAAGCAAGACAAGCCCCGGACACCCATGCCCAGCTCAGGGGAAACCAAAAGGACAGACATGGCTGTACAGGCCACAGGCTCTGCACCATCTACTCCAATAACTCACCAAGGATCCAGCTCTGGTTTGAACACACCAGAAACGTTCAGATGTG
Seq C2 exon
GCCTGGGCAGTCCCAGTAGTGGAACCCCACTCACACCTGCAGCCCGGATATCAGCCTTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058007-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=1.000 C2=0.516
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=PU(20.3=87.2)
A:
PF048808=NUDE_C=FE(29.7=100)
C2:
PF048808=NUDE_C=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAATCATGTCCCTGGAA
R:
CAACTTTCCGAAGCAGGTCCC
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]