BtaEX6108681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14209637-14212653:+
Coord C1 exon
chr25:14209637-14209773
Coord A exon
chr25:14211136-14211315
Coord C2 exon
chr25:14212562-14212653
Length
180 bp
Sequences
Splice sites
3' ss Seq
NNNNNNNNNNNNNNGCCTAGATT
3' ss Score
0
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGCCACGATCATGTCACTGGAGGACTTTGAACAGCGTTTGAATCAAGCCATAGAAAGAAACGCCTTCCTGGAGAGCGAACTGGACGAGAAGGAGAATCTCCTGGAATCTGTTCAGCGACTGAAGGATGAAGCCAGAG
Seq A exon
ATTTGCGGCAGGAATTGGCTGTGCAGCAAAAGCAGGAGAAACCCAGGACGCCCATGCCCAGCTCAGTGGACGCTGAGAGGACCGACACAGCAGTGCAGGCCACTGGCTCTGTGCCGTCCACCCCCATAGCTCATCGAGGACCCAGCTCTAGTTTAAACACTCCTGGGACCTTCAGACGTG
Seq C2 exon
GCCTGGACGACTCCACTGGGGGGACCCCCCTCACACCCGCAGCCCGGATATCAGCCCTCAACATCGTGGGAGACCTGCTGCGGAAAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=1.000 C2=0.516
Domain overlap (PFAM):
C1:
PF057016=WEMBL=FE(23.2=100),PF048808=NUDE_C=PU(20.6=87.2)
A:
PF057016=WEMBL=PD(14.1=45.9),PF048808=NUDE_C=FE(30.2=100)
C2:
PF048808=NUDE_C=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACGATCATGTCACTGG
R:
CACTTTCCGCAGCAGGTCTC
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]