MmuEX6060954 @ mm9

Exon Skipping

Gene

ENSMUSG00000022678 | Nde1

Description

nuclear distribution gene E homolog 1 (A nidulans) [Source:MGI Symbol;Acc:MGI:1914453]

Coordinates

chr16:14183569-14188497:+

Coord C1 exon

chr16:14183569-14183705

Coord A exon

chr16:14185787-14185966

Coord C2 exon

chr16:14188406-14188497

Length

180 bp

Sequences

Splice sites

3' ss Seq

TGGACCCTTTCCCTGTGCAGATC

3' ss Score

10.73

5' ss Seq

GTGGTAAGG

5' ss Score

8.37

Exon sequences

Seq C1 exon

AGCCACAATCATGTCCCTGGAAGACTTTGAGCAGCGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAGAATCTTCTAGAATCTGTGCAGAGGCTGAAGGATGAAGCCCGAG

Seq A exon

ATCTGCGGCAGGAATTGGCTGTGCAACAGAAGCAAGACAAGCCCCGGACACCCATGCCAGGCTCAGGGCAAGCCAAGAGGACAGACATGGCTGTGCAGGCCACAGGCTCTGTACCGTCTACTCCAGTAGCTCACCGAGGACCTAGCTCTGGTTTGAACACACCAGGAATGTTCAGACGTG

Seq C2 exon

GTCTGGACAGCTCCACTAGTGGGACGCCACTCACACCTGCAGCCCGGATATCAGCCCTAAACATCGTTGGGGACCTGCTTCGGAAAGTTGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000022678-'9-11,'9-10,10-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.573 A=1.000 C2=0.555

Domain overlap (PFAM):

C1:

PF050557=DUF677=PD(4.9=40.0),PF079267=TPR_MLP1_2=PD(3.8=30.0),PF040127=PspA_IM30=PD(11.6=80.0),PF088265=DMPK_coil=PD(1.8=10.0),PF0017016=bZIP_1=PD(6.4=30.0)

A:

PF057016=WEMBL=PD(10.4=32.8),PF048808=NUDE_C=FE(30.5=100)

C2:

PF048808=NUDE_C=FE(15.2=100)

Main Inclusion Isoform:

ENSMUSP00000023359