BtaINT0004138 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr24:49965996-49967358:-
Coord C1 exon
chr24:49967073-49967358
Coord A exon
chr24:49966171-49967072
Coord C2 exon
chr24:49965996-49966170
Length
902 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCACTCTTCCTGTGTCTAAGGTA
3' ss Score
6.6
Exon sequences
Seq C1 exon
TGTCGGCCATGTTGGAGAACGAGAGCATTCAGGGTCTGTCTGGGGTGAAGCCCACGGGCTACCGGAAGCGCACCTCCAGCATGCCGGAAGGAGACAACTCGTACTGCCTGGAAGCCATCATCCGCCAGATGAACTCCTTCCACACGGTTATGTGCGACCAGGGCCTGGACCCCGAGATCATCCTGCAGGTGTTCAGACAGCTCTTCTACATGATCAACGCGGTGACGCTCAACAACCTGCTTCTGCGGAAGGACGTCTGCTCCTGGAGCACAGGCATGCAGCTCAG
Seq A exon
GTAGGCGAGCGCACCTCAGCCCACCCCCAGGGGAGGGGACACCCCACACGCCAGCTCCACTCACACACGGGGGACATTTGTCTCTGAAAATGACAGCCAAATCCAAGTGGCCGTCCTTGTCACAGGCAGTGTGTGACTCAGATCCATCACTTTTTTATTTGTTGATGAAAGTCATCACATACCGAGGAGGCTGCTGCTGCTAATTCGCATCAGTCGTGTCCGACTCTGTGATACCCCATAGACAGCAGCCCACCAGGCTCCTCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGGTGCCACTGCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGCCGCTCAGTCGTGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTGACAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCACCGAGGAGGTGAACTTGGTAAACAAATCAGTTCAAAGCTCAAATATTTGCAGACTTTATAAAGGTTGTAAATATGATTTGGCTAGGTTGGAGAGAAAAATCAATGATTTAAGAGGCATGATGGCTCACCGGAGTACAAATATGTTTGCGAATGTTAAATGTAAGTTGTTTTAACTCAGTATAGTTAATGCCTCTTTTCTTCATTAACTTAGTACAGACACTTTAGGCACTTCATCTTGGCTTGGTTTTAAGCACCCACTCATTCCGCAAACAGTTACTGAGTGCCACATACTTGTCACGTTCTTGCCCACATGAGAGAATCAAGAGGAGGAGAGTGATAACACTAGTGGTAGCTGGGCTGCAGAAGAAAGCCATGAGGTGAGCTCGTCCCAGTGAAGCAGGAGGACAGGCATCACAGGGTGCACTCTTCCTGTGTCTAAG
Seq C2 exon
GTACAACATTAGTCAGCTGGAGGAATGGCTTCGGGGAAGAAACCTGCACCAGAGCGGAGCTGTTGAGACCATGGAACCCCTGATTCAGGCTGCCCAGCTCCTGCAGTTAAAGAAGAAAAGCCCCGAGGATGCTGAGGCCATCTGCTCCCTGTGCACCGCCCTCAGCACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455:ENSBTAT00000061584:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.4)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGCATTCAGGGTCTGT
R:
AGGGGTTCCATGGTCTCAACA
Band lengths:
349-1251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]