HsaINT0108823 @ hg38
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr18:49836711-49837802:-
Coord C1 exon
chr18:49837517-49837802
Coord A exon
chr18:49836886-49837516
Coord C2 exon
chr18:49836711-49836885
Length
631 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTTTCTACCTATGGCTAAGGTA
3' ss Score
2.64
Exon sequences
Seq C1 exon
TTTCTGCCATGTTGGAAAATGAGAGCATTCAGGGTCTATCTGGTGTGAAGCCCACCGGCTACCGGAAGCGCTCCTCCAGCATGGCAGATGGGGATAACTCATACTGCCTGGAAGCTATCATCCGCCAGATGAATGCCTTTCATACAGTCATGTGTGACCAGGGCTTGGACCCTGAGATCATCCTGCAGGTATTCAAACAGCTCTTCTACATGATCAACGCAGTGACTCTTAACAACCTGCTCTTGCGGAAGGACGTCTGCTCTTGGAGCACAGGCATGCAACTCAG
Seq A exon
GTAAGGGAGGAGCACCCCCCAACAACACAGATAGAGTGGGCCCTCACTGACTGCAGCTAGAATCAGAACACAAGACTGCTGTTTCTAAAAATGAAATCCAAATCTAATTGACAGTCCTTGTCTCCATCAGTCTGTGACTCAAATCCATCACCTTTTTACCTGTTGGTGAAATCCGTCGAACACTGAGATGGTTGACTTGGTAAACAAATTAGTTCAAAGCTTAAAGATGTTGACATACTCTAAGTTAAAGACTGAATACAAAGCAGATAGGTCAGAGAGAAAACTCAATGAGTTAAGAGGCATGAAGGCTCACATAGAAGTATAAATACATTTGTGAATGTTAAATATAAATACTTACAATTCAGTATATTTAATGCCTGTTTTTCCCTGTTAACTTATGTAGACACTTCAGGTATTTCATCTTTGCTTGATTTTAAGTACCCACTCATTCATTTATTCATTCTTTATTCAACAAATAGTTCCTGAGTGCAAGGCACTTGCCATGCTTTTTAACCGTGTGAGATAAATAATGGCACTAGCTGCAGCGGGCCTGCAAAACACAACAGGTGTCCCCTTCTCAGTGAATTAGGAGGACCGGCTTAACATAGCTTGCTTTCTACCTATGGCTAAG
Seq C2 exon
GTACAATATAAGTCAGCTTGAGGAGTGGCTTCGGGGAAGAAACCTTCACCAGAGTGGAGCAGTTCAGACCATGGAACCTCTGATCCAAGCAGCCCAGCTCCTGCAATTAAAGAAGAAAACCCAGGAGGACGCAGAGGCTATCTGCTCCCTGTGTACCTCCCTCAGCACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306:ENST00000285039:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.4)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCTATCATCCGCCAGA
R:
CTGAGGGAGGTACACAGGGAG
Band lengths:
343-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains